Package: ccRemover
Type: Package
Title: Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
        Data
Version: 1.0.4
Authors@R: c(
    person("Jun", "Li", email = "jun.li@nd.edu",role = c("aut","cre")),
    person("Martin", "Barron", email = "mbarron2@nd.edu",role = c("aut")))
Description: Implements a method for identifying and removing the
        cell-cycle effect from scRNA-Seq data. The description of the
        method is in Barron M. and Li J. (2016)
        <doi:10.1038/srep33892>. Identifying and removing the
        cell-cycle effect from single-cell RNA-Sequencing data.
        Submitted. Different from previous methods, ccRemover
        implements a mechanism that formally tests whether a component
        is cell-cycle related or not, and thus while it often
        thoroughly removes the cell-cycle effect, it preserves other
        features/signals of interest in the data.
Depends: R (>= 2.10.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Imports: stats, utils
NeedsCompilation: no
Packaged: 2026-07-04 18:33:09 UTC; root
Author: Jun Li [aut, cre], Martin Barron [aut]
Maintainer: Jun Li <jun.li@nd.edu>
Repository: https://jli-stat.r-universe.dev
Date/Publication: 2017-08-19 11:23:32 UTC
RemoteUrl: https://github.com/cran/ccRemover
RemoteRef: HEAD
RemoteSha: 39249bf6eb19b13bcd01f842b4c51101a51ab316