Package: scSorter 0.0.2

scSorter: Implementation of 'scSorter' Algorithm

Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.

Authors:Hongyu Guo [aut], Jun Li [aut, cre]

scSorter_0.0.2.tar.gz
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scSorter.pdf |scSorter.html✨
scSorter/json (API)

# Install 'scSorter' in R:
install.packages('scSorter', repos = c('https://jli-stat.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 229 downloads 2 mentions 3 exports 0 dependencies

Last updated 4 years agofrom:873c1c3308. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 31 2025
R-4.5-winOKJan 31 2025
R-4.5-macOKJan 31 2025
R-4.5-linuxOKJan 31 2025
R-4.4-winOKJan 31 2025
R-4.4-macOKJan 31 2025
R-4.3-winOKJan 31 2025
R-4.3-macOKJan 31 2025

Exports:scSorterxfindvariable_genesxnormalize_scData

Dependencies:

Single-cell Sorter

Hongyu Guo

Rendered fromscSorter.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2021-03-17
Started: 2020-09-01